PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33912-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 237aa    MW: 27054.7 Da    PI: 10.803
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33912-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09130177348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       WT eE ++lv++vk +G g W+ + ++      R + ++k++w+++l
  TRIUR3_33912-P1 130 HWTHEEVKKLVKGVKTYGAGKWTMVKSHYFssSVRDPTHLKDKWRNLL 177
                      5***************************999*77************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.465123181IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-11124178IPR009057Homeodomain-like
SuperFamilySSF466892.54E-13125185IPR009057Homeodomain-like
SMARTSM007178.4E-7127179IPR001005SANT/Myb domain
PfamPF139211.2E-9131178No hitNo description
CDDcd116604.46E-17131178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESAEEVEIW APILADPLDW PPSSVTVLLP SQVLPTFPFF ISRFPSHMFM LDAPRVVNIA  60
PTKPIVRPTI CNSASPSLKI EIKIKQFAQE PEDLIVKENW RRGPRGPRKR RVFPSGSGGM  120
NFHRRKNNEH WTHEEVKKLV KGVKTYGAGK WTMVKSHYFS SSVRDPTHLK DKWRNLLRAC  180
GVMCASKRKE KAQKTMFLPL DTNLIEQIQG LAIHSAFASK MKKCHGKGTI RLEMITK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697004.15e-34PREDICTED: uncharacterized protein LOC102701027
TrEMBLM8AWB91e-177M8AWB9_TRIUA; Uncharacterized protein
STRINGBGIOSGA033038-PA3e-33(Oryza sativa Indica Group)
STRINGLOC_Os10g30719.15e-33(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-15TRF-like 6